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Anaquin

This is the development version of Anaquin; for the stable release version, see Anaquin.

Statistical analysis of sequins


Bioconductor version: Development (3.19)

The project is intended to support the use of sequins (synthetic sequencing spike-in controls) owned and made available by the Garvan Institute of Medical Research. The goal is to provide a standard open source library for quantitative analysis, modelling and visualization of spike-in controls.

Author: Ted Wong

Maintainer: Ted Wong <t.wong at garvan.org.au>

Citation (from within R, enter citation("Anaquin")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Anaquin")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Anaquin")
Anaquin - Vignette PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DifferentialExpression, GeneExpression, ImmunoOncology, Preprocessing, RNASeq, Software
Version 2.27.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License BSD_3_clause + file LICENSE
Depends R (>= 3.3), ggplot2 (>= 2.2.0)
Imports ggplot2, ROCR, knitr, qvalue, locfit, methods, stats, utils, plyr, DESeq2
System Requirements
URL www.sequin.xyz
Bug Reports https://github.com/student-t/RAnaquin/issues
See More
Suggests RUnit, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Anaquin_2.27.0.tar.gz
Windows Binary Anaquin_2.27.0.zip
macOS Binary (x86_64) Anaquin_2.27.0.tgz
macOS Binary (arm64) Anaquin_2.27.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Anaquin
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Anaquin
Bioc Package Browser https://code.bioconductor.org/browse/Anaquin/
Package Short Url https://bioconductor.org/packages/Anaquin/
Package Downloads Report Download Stats