BasicSTARRseq
Basic peak calling on STARR-seq data
Bioconductor version: 3.24 · Package version: 1.41.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Basic peak calling on STARR-seq data based on a method introduced in "Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq" Arnold et al. Science. 2013 Mar 1;339(6123):1074-7. doi: 10.1126/science. 1232542. Epub 2013 Jan 17.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BasicSTARRseq")Details
| Maintainer | Annika Buerger <annika.buerger@ukmuenster.de> |
| Author | Annika Buerger |
| License | LGPL-3 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Coverage, FunctionalGenomics, FunctionalPrediction, GeneRegulation, PeakDetection, Software |
| Package Short Url | https://bioconductor.org/packages/BasicSTARRseq/ |
Citation
From within R, enter citation("BasicSTARRseq"):
Annika Buerger. BasicSTARRseq: Basic peak calling on STARR-seq data. doi:10.18129/B9.bioc.BasicSTARRseq, R package version 1.41.0, https://bioconductor.org/packages/BasicSTARRseq.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | BasicSTARRseq_1.41.0.tar.gz |
| Windows binary (x86_64) | BasicSTARRseq_1.41.0.zip |
| macOS binary (arm64) | BasicSTARRseq_1.41.0.tgz |
| macOS binary (x86_64) | BasicSTARRseq_1.41.0.tgz |
Dependencies
Depends: GenomicRanges, GenomicAlignments
Imports: S4Vectors, methods, IRanges, Seqinfo, stats
Suggests: knitr