DOI: 10.18129/B9.bioc.BasicSTARRseq    

This is the development version of BasicSTARRseq; for the stable release version, see BasicSTARRseq.

Basic peak calling on STARR-seq data

Bioconductor version: Development (3.9)

Basic peak calling on STARR-seq data based on a method introduced in "Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq" Arnold et al. Science. 2013 Mar 1;339(6123):1074-7. doi: 10.1126/science. 1232542. Epub 2013 Jan 17.

Author: Annika Buerger

Maintainer: Annika Buerger <annika.buerger at>

Citation (from within R, enter citation("BasicSTARRseq")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("BasicSTARRseq", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script BasicSTARRseq.pdf
PDF   Reference Manual
Text   NEWS


biocViews Coverage, FunctionalGenomics, FunctionalPrediction, GeneRegulation, PeakDetection, Software
Version 1.11.0
In Bioconductor since BioC 3.3 (R-3.3) (3 years)
License LGPL-3
Depends GenomicRanges, GenomicAlignments
Imports S4Vectors, methods, IRanges, GenomeInfoDb, stats
Suggests knitr
Depends On Me
Imports Me
Suggests Me
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package BasicSTARRseq_1.11.0.tar.gz
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Mac OS X 10.11 (El Capitan) BasicSTARRseq_1.11.0.tgz
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