CGHbase

DOI: 10.18129/B9.bioc.CGHbase    

This is the development version of CGHbase; for the stable release version, see CGHbase.

CGHbase: Base functions and classes for arrayCGH data analysis.

Bioconductor version: Development (3.13)

Contains functions and classes that are needed by arrayCGH packages.

Author: Sjoerd Vosse, Mark van de Wiel

Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>

Citation (from within R, enter citation("CGHbase")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CGHbase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews CopyNumberVariation, Infrastructure, Microarray, Software
Version 1.51.0
In Bioconductor since BioC 2.3 (R-2.8) (12 years)
License GPL
Depends R (>= 2.10), methods, Biobase(>= 2.5.5), marray
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL https://github.com/tgac-vumc/CGHbase
BugReports https://github.com/tgac-vumc/CGHbase/issues
Depends On Me CGHcall, CGHnormaliter, CGHregions, GeneBreak
Imports Me CGHnormaliter, QDNAseq
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CGHbase_1.51.0.tar.gz
Windows Binary CGHbase_1.51.0.zip
macOS 10.13 (High Sierra) CGHbase_1.51.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CGHbase
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CGHbase
Package Short Url https://bioconductor.org/packages/CGHbase/
Package Downloads Report Download Stats

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