DOI: 10.18129/B9.bioc.CNPBayes    

This is the development version of CNPBayes; for the stable release version, see CNPBayes.

Bayesian mixture models for copy number polymorphisms

Bioconductor version: Development (3.8)

Bayesian hierarchical mixture models for batch effects and copy number.

Author: Stephen Cristiano, Robert Scharpf, and Jacob Carey

Maintainer: Jacob Carey <jcarey15 at>

Citation (from within R, enter citation("CNPBayes")):


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PDF R Script Identifying Copy Number Polymorphisms
PDF R Script Implementation of Bayesian mixture models for copy number estimation
PDF R Script Overview of CNPBayes package
PDF R Script Overview of CNPBayes package
PDF   Reference Manual


biocViews Bayesian, CopyNumberVariation, Software
Version 1.11.0
In Bioconductor since BioC 3.2 (R-3.2) (2.5 years)
License Artistic-2.0
Depends R (>= 3.4.0), IRanges, GenomicRanges
Imports Rcpp (>= 0.12.1), S4Vectors, matrixStats, RColorBrewer, gtools, combinat, GenomeInfoDb(>= 1.11.6), methods, BiocGenerics, graphics, stats, coda, SummarizedExperiment, mclust, reshape2, ggplot2, magrittr, purrr, tidyr, dplyr, tibble, scales
LinkingTo Rcpp
Suggests testthat, knitr, BiocStyle, rmarkdown, BiocCheck, MASS
Depends On Me
Imports Me
Suggests Me
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