ChIPsim
Simulation of ChIP-seq experiments
Bioconductor version: 3.24 · Package version: 1.67.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ChIPsim")Details
| Maintainer | Peter Humburg <Peter.Humburg@gmail.com> |
| Author | Peter Humburg |
| License | GPL (>= 2) |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | ChIPSeq, Infrastructure, Software |
| Package Short Url | https://bioconductor.org/packages/ChIPsim/ |
Citation
From within R, enter citation("ChIPsim"):
Peter Humburg. ChIPsim: Simulation of ChIP-seq experiments. doi:10.18129/B9.bioc.ChIPsim, R package version 1.67.0, https://bioconductor.org/packages/ChIPsim.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ChIPsim_1.67.0.tar.gz |
| Windows binary (x86_64) | ChIPsim_1.67.0.zip |
| macOS binary (arm64) | ChIPsim_1.67.0.tgz |
| macOS binary (x86_64) | ChIPsim_1.67.0.tgz |
Dependencies
Depends: Biostrings (>= 2.29.2)
Imports: IRanges, XVector, Biostrings, ShortRead, graphics, methods, stats, utils