DNAcycP2
DNA Cyclizability Prediction
Bioconductor version: 3.24 · Package version: 1.5.1
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package performs prediction of intrinsic cyclizability of of every 50-bp subsequence in a DNA sequence. The input could be a file either in FASTA or text format. The output will be the C-score, the estimated intrinsic cyclizability score for each 50 bp sequences in each entry of the sequence set.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DNAcycP2")Details
| Maintainer | Ji-Ping Wang <jzwang@northwestern.edu> |
| Author | Brody Kendall [aut], Keren Li [aut], Ji-Ping Wang [aut, cre] (ORCID: <https://orcid.org/0000-0002-8398-939X>) |
| License | Artistic-2.0 |
| URL | https://github.com/jipingw/DNAcycP2 |
| Bug Reports | https://github.com/jipingw/DNAcycP2 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | NeuralNetwork, Software, StructuralPrediction |
| Package Short Url | https://bioconductor.org/packages/DNAcycP2/ |
Citation
From within R, enter citation("DNAcycP2"):
Brody Kendall, Keren Li, Ji-Ping Wang. DNAcycP2: DNA Cyclizability Prediction. doi:10.18129/B9.bioc.DNAcycP2, R package version 1.5.1, https://bioconductor.org/packages/DNAcycP2.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | DNAcycP2_1.5.1.tar.gz |
| Windows binary (x86_64) | DNAcycP2_1.5.1.zip |
| macOS binary (arm64) | DNAcycP2_1.5.1.tgz |
| macOS binary (x86_64) | DNAcycP2_1.5.1.tgz |
Dependencies
Depends: R (>= 4.4.0)
Imports: basilisk, reticulate
Suggests: knitr, rmarkdown, BiocGenerics, RUnit, tinytest, BiocStyle, Biostrings