DOI: 10.18129/B9.bioc.DeepBlueR    

This is the development version of DeepBlueR; for the stable release version, see DeepBlueR.


Bioconductor version: Development (3.9)

Accessing the DeepBlue Epigenetics Data Server through R.

Author: Felipe Albrecht, Markus List

Maintainer: Felipe Albrecht <felipe.albrecht at>, Markus List <markus.list at>

Citation (from within R, enter citation("DeepBlueR")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("DeepBlueR", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script The DeepBlue epigenomic data server - R package
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biocViews Annotation, CpGIsland, DNAMethylation, DataImport, DataRepresentation, Epigenetics, GeneRegulation, GenomeAnnotation, ImmunoOncology, Preprocessing, Software, ThirdPartyClient
Version 1.9.1
In Bioconductor since BioC 3.4 (R-3.3) (2.5 years)
License GPL (>=2.0)
Depends R (>= 3.3), XML, RCurl
Imports GenomicRanges, data.table, stringr, diffr, dplyr, methods, rjson, utils, R.utils, foreach, withr, rtracklayer, GenomeInfoDb, settings, filehash
Suggests knitr, rmarkdown, LOLA, Gviz, gplots, ggplot2, tidyr, RColorBrewer, matrixStats
Depends On Me
Imports Me
Suggests Me
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package DeepBlueR_1.9.1.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.11 (El Capitan) DeepBlueR_1.9.1.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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