EpiTxDb
This is the development version of EpiTxDb; for the stable release version, see EpiTxDb.
Storing and accessing epitranscriptomic information using the AnnotationDbi interface
Bioconductor version: Development (3.20)
EpiTxDb facilitates the storage of epitranscriptomic information. More specifically, it can keep track of modification identity, position, the enzyme for introducing it on the RNA, a specifier which determines the position on the RNA to be modified and the literature references each modification is associated with.
Author: Felix G.M. Ernst [aut, cre]
Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>
citation("EpiTxDb")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("EpiTxDb")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("EpiTxDb")
EpiTxDb | HTML | R Script |
EpiTxDb-creation | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Epitranscriptomics, Software |
Version | 1.17.0 |
In Bioconductor since | BioC 3.11 (R-4.0) (4.5 years) |
License | Artistic-2.0 |
Depends | R (>= 4.0), AnnotationDbi, Modstrings |
Imports | methods, utils, httr, xml2, curl, rex, GenomicFeatures, txdbmaker, GenomicRanges, GenomeInfoDb, BiocGenerics, BiocFileCache, S4Vectors, IRanges, RSQLite, DBI, Biostrings, tRNAdbImport |
System Requirements | |
URL | https://github.com/FelixErnst/EpiTxDb |
Bug Reports | https://github.com/FelixErnst/EpiTxDb/issues |
See More
Suggests | BiocStyle, knitr, rmarkdown, testthat, httptest, AnnotationHub, ensembldb, ggplot2, EpiTxDb.Hs.hg38, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Scerevisiae.UCSC.sacCer3, TxDb.Hsapiens.UCSC.hg38.knownGene |
Linking To | |
Enhances | |
Depends On Me | EpiTxDb.Hs.hg38, EpiTxDb.Mm.mm10, EpiTxDb.Sc.sacCer3 |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | EpiTxDb_1.17.0.tar.gz |
Windows Binary | EpiTxDb_1.17.0.zip |
macOS Binary (x86_64) | EpiTxDb_1.17.0.tgz |
macOS Binary (arm64) | EpiTxDb_1.17.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/EpiTxDb |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/EpiTxDb |
Bioc Package Browser | https://code.bioconductor.org/browse/EpiTxDb/ |
Package Short Url | https://bioconductor.org/packages/EpiTxDb/ |
Package Downloads Report | Download Stats |