GenomicCoordinates
This is the development version of GenomicCoordinates; for the stable release version, see GenomicCoordinates.
All Bioconductor versions of GenomicCoordinates
3.24 (devel), 3.23 (release)
Enhanced string parsing for genomic coordinates
Bioconductor version: 3.24 · Package version: 1.1.0
Extends string parsing capabilities for genomic coordinates, supporting various formats including comma-separated numbers, space-delimited coordinates, and automatic detection of GRanges, GPos, and GInteractions objects.
Author: Jacques Serizay [aut, cre] 
Maintainer: Jacques Serizay <jacquesserizay at gmail.com>
Citation
From within R, enter citation("GenomicCoordinates"):
Jacques Serizay. GenomicCoordinates: Enhanced string parsing for genomic coordinates. doi:10.18129/B9.bioc.GenomicCoordinates, R package version 1.1.0, https://bioconductor.org/packages/GenomicCoordinates.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("GenomicCoordinates")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.1.0 |
| License | Artistic-2.0 |
| URL | https://github.com/js2264/GenomicCoordinates |
| Bug Reports | https://github.com/js2264/GenomicCoordinates/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.23 (R-4.6) (less than a year) |
| Downloads rank | 2346 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataRepresentation, GenomeAnnotation, Infrastructure, Software |
| Package Short Url | https://bioconductor.org/packages/GenomicCoordinates/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenomicCoordinates")| GenomicCoordinates: Enhanced String Parsing for Genomic Coordinates | HTML | R Script |
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | GenomicCoordinates_1.1.0.tar.gz |
| Windows binary (x86_64) | GenomicCoordinates_1.1.0.zip |
| macOS binary (arm64) | GenomicCoordinates_1.1.0.tgz |
| macOS binary (x86_64) | GenomicCoordinates_1.1.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GenomicCoordinates |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GenomicCoordinates |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.5), GenomicRanges, IRanges
Imports: S4Vectors, Seqinfo, InteractionSet, methods, plyranges, plyinteractions
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, BiocStyle