GenomicTuples
This is the development version of GenomicTuples; for the stable release version, see GenomicTuples.
All Bioconductor versions of GenomicTuples
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0
Representation and Manipulation of Genomic Tuples
Bioconductor version: 3.24 · Package version: 1.47.0
GenomicTuples defines general purpose containers for storing genomic tuples. It aims to provide functionality for tuples of genomic co-ordinates that are analogous to those available for genomic ranges in the GenomicRanges Bioconductor package.
Author: Peter Hickey [aut, cre], Marcin Cieslik [ctb], Hervé Pagès [ctb]
Maintainer: Peter Hickey <peter.hickey at gmail.com>
Citation
From within R, enter citation("GenomicTuples"):
Peter Hickey. GenomicTuples: Representation and Manipulation of Genomic Tuples. doi:10.18129/B9.bioc.GenomicTuples, R package version 1.47.0, https://bioconductor.org/packages/GenomicTuples.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("GenomicTuples")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.47.0 |
| License | Artistic-2.0 |
| URL | www.github.com/PeteHaitch/GenomicTuples |
| Bug Reports | https://github.com/PeteHaitch/GenomicTuples/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.0 (R-3.1) (11 years) |
| Downloads rank | 822 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataRepresentation, Infrastructure, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/GenomicTuples/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenomicTuples")| GenomicTuples: Classes and Methods | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | GenomicTuples_1.47.0.tar.gz |
| Windows binary (x86_64) | GenomicTuples_1.47.0.zip |
| macOS binary (arm64) | GenomicTuples_1.47.0.tgz |
| macOS binary (x86_64) | GenomicTuples_1.47.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GenomicTuples |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GenomicTuples |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.0), GenomicRanges (>= 1.37.4), Seqinfo, S4Vectors (>= 0.17.25)
Imports: methods, BiocGenerics (>= 0.21.2), Rcpp (>= 0.11.2), IRanges (>= 2.19.13), data.table, stats4, stats, utils
LinkingTo: Rcpp
Suggests: testthat, knitr, BiocStyle, rmarkdown, covr, GenomicAlignments, Biostrings, GenomeInfoDb