HuBMAPR
Interface to 'HuBMAP'
Bioconductor version: 3.24 · Package version: 1.7.2
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
'HuBMAP' provides an open, global bio-molecular atlas of the human body at the cellular level. The `datasets()`, `samples()`, `donors()`, `publications()`, and `collections()` functions retrieves the information for each of these entity types. `*_details()` are available for individual entries of each entity type. `*_derived()` are available for retrieving derived datasets or samples for individual entries of each entity type. Data files can be accessed using `bulk_data_transfer()`.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HuBMAPR")Details
| Maintainer | Christine Hou <chris2018hou@gmail.com> |
| Author | Christine Hou [aut, cre] (ORCID: <https://orcid.org/0009-0001-5350-0629>), Martin Morgan [aut] (ORCID: <https://orcid.org/0000-0002-5874-8148>), Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>) |
| License | Artistic-2.0 |
| URL | https://christinehou11.github.io/HuBMAPR/, https://github.com/christinehou11/HuBMAPR |
| Bug Reports | https://github.com/christinehou11/HuBMAPR/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, Infrastructure, SingleCell, Software, Spatial, ThirdPartyClient |
| Package Short Url | https://bioconductor.org/packages/HuBMAPR/ |
Citation
From within R, enter citation("HuBMAPR"):
Christine Hou, Martin Morgan, Federico Marini. HuBMAPR: Interface to 'HuBMAP'. doi:10.18129/B9.bioc.HuBMAPR, R package version 1.7.2, https://bioconductor.org/packages/HuBMAPR.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | HuBMAPR_1.7.2.tar.gz |
| Windows binary (x86_64) | HuBMAPR_1.7.2.zip |
| macOS binary (arm64) | HuBMAPR_1.7.2.tgz |
| macOS binary (x86_64) | HuBMAPR_1.7.2.tgz |