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HumanTranscriptomeCompendium

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of HumanTranscriptomeCompendium; for the stable release version, see HumanTranscriptomeCompendium.

Tools to work with a Compendium of 181000 human transcriptome sequencing studies


Bioconductor version: Development (3.19)

Provide tools for working with a compendium of human transcriptome sequences (originally htxcomp).

Author: Sean Davis, Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("HumanTranscriptomeCompendium")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("HumanTranscriptomeCompendium")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HumanTranscriptomeCompendium")
HumanTranscriptomeCompendium -- a cloud-resident collection of sequenced human transcriptomes HTML R Script
Reference Manual PDF

Details

biocViews Infrastructure, Software, Transcriptomics
Version 1.19.2
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License Artistic-2.0
Depends R (>= 3.6)
Imports shiny, ssrch, S4Vectors, SummarizedExperiment, utils, BiocManager
System Requirements
URL
See More
Suggests knitr, BiocStyle, beeswarm, tximportData, DT, tximport, dplyr, magrittr, BiocFileCache, testthat, rhdf5client, rmarkdown
Linking To
Enhances
Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HumanTranscriptomeCompendium_1.19.2.tar.gz
Windows Binary HumanTranscriptomeCompendium_1.19.2.zip
macOS Binary (x86_64) HumanTranscriptomeCompendium_1.19.2.tgz
macOS Binary (arm64) HumanTranscriptomeCompendium_1.19.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/HumanTranscriptomeCompendium
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HumanTranscriptomeCompendium
Package Short Url https://bioconductor.org/packages/HumanTranscriptomeCompendium/
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