DOI: 10.18129/B9.bioc.InteractionSet    

This is the development version of InteractionSet; for the stable release version, see InteractionSet.

Base Classes for Storing Genomic Interaction Data

Bioconductor version: Development (3.7)

Provides the GInteractions, InteractionSet and ContactMatrix objects and associated methods for storing and manipulating genomic interaction data from Hi-C and ChIA-PET experiments.

Author: Aaron Lun <alun at>, Malcolm Perry <mgperry32 at>, Liz Ing-Simmons < at>

Maintainer: Aaron Lun <alun at>

Citation (from within R, enter citation("InteractionSet")):


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biocViews DataRepresentation, HiC, Infrastructure, Software
Version 1.7.6
In Bioconductor since BioC 3.3 (R-3.3) (2 years)
License GPL-3
Depends R (>= 3.5), GenomicRanges, SummarizedExperiment
Imports IRanges, S4Vectors(>= 0.17.21), GenomeInfoDb, BiocGenerics, methods, Matrix, Rcpp
LinkingTo Rcpp
Suggests testthat, knitr, rmarkdown, BiocStyle
SystemRequirements C++11
Depends On Me diffHic, GenomicInteractions, MACPET
Imports Me HiCcompare
Suggests Me
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Source Package InteractionSet_1.7.6.tar.gz
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Mac OS X 10.11 (El Capitan) InteractionSet_1.7.6.tgz
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