LINC

DOI: 10.18129/B9.bioc.LINC    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of LINC; for the stable release version, see LINC.

co-expression of lincRNAs and protein-coding genes

Bioconductor version: Development (3.12)

This package provides methods to compute co-expression networks of lincRNAs and protein-coding genes. Biological terms associated with the sets of protein-coding genes predict the biological contexts of lincRNAs according to the 'Guilty by Association' approach.

Author: Manuel Goepferich, Carl Herrmann

Maintainer: Manuel Goepferich <manuel.goepferich at gmx.de>

Citation (from within R, enter citation("LINC")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("LINC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews BiologicalQuestion, GeneExpression, GeneRegulation, Software
Version 1.17.1
In Bioconductor since BioC 3.4 (R-3.3) (4 years)
License Artistic-2.0
Depends R (>= 3.3.1), methods, stats
Imports Rcpp (>= 0.11.0), DOSE, ggtree, gridExtra, ape, grid, png, Biobase, sva, reshape2, utils, grDevices, org.Hs.eg.db, clusterProfiler, ggplot2, ReactomePA
LinkingTo Rcpp
Suggests RUnit, BiocGenerics, knitr, biomaRt
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/LINC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LINC
Package Short Url https://bioconductor.org/packages/LINC/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: