LRDE
Differential Expression Analysis with Long Read RNA-Seq Data
Bioconductor version: 3.24 · Package version: 1.1.2
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Provides hurdle negative binomial models for differential expression analysis with long-read RNA-Seq data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("LRDE")Details
| Maintainer | Ziyang Liu <jacobleo773@gmail.com> |
| Author | Ziyang Liu [aut, cre] (ORCID: <https://orcid.org/0009-0004-2098-434X>), Hongxu Ding [aut, fnd], Xiaoxiao Sun [aut, fnd], Ziyuan Wang [aut, fnd] |
| License | MIT + file LICENSE |
| URL | https://github.com/ziyang773/LRDE |
| Bug Reports | https://github.com/ziyang773/LRDE/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialExpression, GeneExpression, LongRead, RNASeq, Regression, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/LRDE/ |
Citation
From within R, enter citation("LRDE"):
Ziyang Liu, Hongxu Ding, Xiaoxiao Sun, Ziyuan Wang. LRDE: Differential Expression Analysis with Long Read RNA-Seq Data. doi:10.18129/B9.bioc.LRDE, R package version 1.1.2, https://bioconductor.org/packages/LRDE.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | LRDE_1.1.2.tar.gz |
| Windows binary (x86_64) | LRDE_1.1.2.zip |
| macOS binary (arm64) | LRDE_1.1.2.tgz |
| macOS binary (x86_64) | LRDE_1.1.2.tgz |
Dependencies
Depends: R (>= 4.5.0)
Imports: stats, SummarizedExperiment
Suggests: BiocStyle, knitr, rmarkdown, BiocGenerics, testthat (>= 3.0.0)