MDTS
This is the development version of MDTS; for the stable release version, see MDTS.
All Bioconductor versions of MDTS
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7
Detection of de novo deletion in targeted sequencing trios
Bioconductor version: 3.24 · Package version: 1.33.0
A package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.
Author: Jack M.. Fu [aut, cre]
Maintainer: Jack M.. Fu <jmfu at jhsph.edu>
Citation
From within R, enter citation("MDTS"):
Jack M.. Fu. MDTS: Detection of de novo deletion in targeted sequencing trios. doi:10.18129/B9.bioc.MDTS, R package version 1.33.0, https://bioconductor.org/packages/MDTS.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("MDTS")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.33.0 |
| License | Artistic-2.0 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.7 (R-3.5) (8 years) |
| Downloads rank | 1813 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Coverage, DataImport, Sequencing, Software, StatisticalMethod, TargetedResequencing, Technology |
| Package Short Url | https://bioconductor.org/packages/MDTS/ |
Documentation
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | MDTS_1.33.0.tar.gz |
| macOS binary (arm64) | MDTS_1.33.0.tgz |
| macOS binary (x86_64) | MDTS_1.33.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MDTS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MDTS |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.5.0)
Imports: GenomicAlignments, GenomicRanges, IRanges, Biostrings, DNAcopy, Rsamtools, parallel, stringr