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MEAT

This is the development version of MEAT; for the stable release version, see MEAT.

Muscle Epigenetic Age Test


Bioconductor version: Development (3.19)

This package estimates epigenetic age in skeletal muscle, using DNA methylation data generated with the Illumina Infinium technology (HM27, HM450 and HMEPIC).

Author: Sarah Voisin [aut, cre] , Steve Horvath [ctb]

Maintainer: Sarah Voisin <sarah.voisin.aeris at gmail.com>

Citation (from within R, enter citation("MEAT")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MEAT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MEAT")
MEAT HTML R Script
Reference Manual PDF

Details

biocViews BiomedicalInformatics, DNAMethylation, Epigenetics, MethylationArray, Microarray, Normalization, Preprocessing, Software
Version 1.15.0
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License MIT + file LICENSE
Depends R (>= 4.0)
Imports impute(>= 1.58), dynamicTreeCut (>= 1.63), glmnet (>= 2.0), grDevices, graphics, stats, utils, stringr, tibble, RPMM (>= 1.25), minfi(>= 1.30), dplyr, SummarizedExperiment, wateRmelon
System Requirements
URL https://github.com/sarah-voisin/MEAT
Bug Reports https://github.com/sarah-voisin/MEAT/issues
See More
Suggests knitr, markdown, rmarkdown, BiocStyle, testthat (>= 2.1.0)
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MEAT_1.15.0.tar.gz
Windows Binary MEAT_1.15.0.zip (64-bit only)
macOS Binary (x86_64) MEAT_1.15.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/MEAT
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MEAT
Bioc Package Browser https://code.bioconductor.org/browse/MEAT/
Package Short Url https://bioconductor.org/packages/MEAT/
Package Downloads Report Download Stats