MMUPHin
This is the development version of MMUPHin; for the stable release version, see MMUPHin.
All Bioconductor versions of MMUPHin
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10
Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies
Bioconductor version: 3.24 · Package version: 2.1.0
MMUPHin is an R package for meta-analysis tasks of microbiome cohorts. It has function interfaces for: a) covariate-controlled batch- and cohort effect adjustment, b) meta-analysis differential abundance testing, c) meta-analysis unsupervised discrete structure (clustering) discovery, and d) meta-analysis unsupervised continuous structure discovery.
Author: Siyuan Ma
Maintainer: Siyuan MA <syma.research at gmail.com>
Citation
From within R, enter citation("MMUPHin"):
Siyuan Ma. MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies. doi:10.18129/B9.bioc.MMUPHin, R package version 2.1.0, https://bioconductor.org/packages/MMUPHin.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("MMUPHin")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 2.1.0 |
| License | MIT + file LICENSE |
| System Requirements | glpk (>= 4.57) |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.10 (R-3.6) (6 years) |
| Downloads rank | 1036 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | BatchEffect, Metagenomics, Microbiome, Software |
| Package Short Url | https://bioconductor.org/packages/MMUPHin/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MMUPHin")| Performing meta-analyses of microbiome studies with MMUPHin | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | MMUPHin_2.1.0.tar.gz |
| Windows binary (x86_64) | MMUPHin_2.1.0.zip |
| macOS binary (arm64) | MMUPHin_2.1.0.tgz |
| macOS binary (x86_64) | MMUPHin_2.1.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MMUPHin |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MMUPHin |
| Package Downloads Report | Download Stats |