MODA
This is the development version of MODA; for the stable release version, see MODA.
All Bioconductor versions of MODA
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4
MODA: MOdule Differential Analysis for weighted gene co-expression network
Bioconductor version: 3.24 · Package version: 1.39.0
MODA can be used to estimate and construct condition-specific gene co-expression networks, and identify differentially expressed subnetworks as conserved or condition specific modules which are potentially associated with relevant biological processes.
Author: Dong Li, James B. Brown, Luisa Orsini, Zhisong Pan, Guyu Hu and Shan He
Maintainer: Dong Li <dxl466 at cs.bham.ac.uk>
Citation
From within R, enter citation("MODA"):
Dong Li, James B. Brown, Luisa Orsini, Zhisong Pan, Guyu Hu and Shan He. MODA: MODA: MOdule Differential Analysis for weighted gene co-expression network. doi:10.18129/B9.bioc.MODA, R package version 1.39.0, https://bioconductor.org/packages/MODA.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("MODA")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.39.0 |
| License | GPL (>= 2) |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.4 (R-3.3) (9 years) |
| Downloads rank | 1683 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialExpression, GeneExpression, Microarray, Network, Software |
| Package Short Url | https://bioconductor.org/packages/MODA/ |
Documentation
| Reference Manual | |
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | MODA_1.39.0.tar.gz |
| Windows binary (x86_64) | MODA_1.39.0.zip |
| macOS binary (arm64) | MODA_1.39.0.tgz |
| macOS binary (x86_64) | MODA_1.39.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MODA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MODA |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.3)
Imports: grDevices, graphics, stats, utils, WGCNA, dynamicTreeCut, igraph, cluster, AMOUNTAIN, RColorBrewer