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MetaVolcanoR

This is the development version of MetaVolcanoR; for the stable release version, see MetaVolcanoR.

Gene Expression Meta-analysis Visualization Tool


Bioconductor version: Development (3.19)

MetaVolcanoR combines differential gene expression results. It implements three strategies to summarize differential gene expression from different studies. i) Random Effects Model (REM) approach, ii) a p-value combining-approach, and iii) a vote-counting approach. In all cases, MetaVolcano exploits the Volcano plot reasoning to visualize the gene expression meta-analysis results.

Author: Cesar Prada [aut, cre], Diogenes Lima [aut], Helder Nakaya [aut, ths]

Maintainer: Cesar Prada <cesar.prada.medina at gmail.com>

Citation (from within R, enter citation("MetaVolcanoR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MetaVolcanoR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaVolcanoR")
MetaVolcanoR inputs: differential expression examples HTML R Script
MetaVolcanoR: Differential expression meta-analysis tool HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, GeneExpression, RNASeq, Software, Transcriptomics, mRNAMicroarray
Version 1.17.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License GPL-3
Depends R (>= 4.1.1)
Imports methods, data.table, dplyr, tidyr, plotly, ggplot2, cowplot, parallel, metafor, metap, rlang, topconfects, grDevices, graphics, stats, htmlwidgets
System Requirements
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Suggests knitr, markdown, rmarkdown, testthat
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MetaVolcanoR_1.17.0.tar.gz
Windows Binary MetaVolcanoR_1.17.0.zip
macOS Binary (x86_64) MetaVolcanoR_1.17.0.tgz
macOS Binary (arm64) MetaVolcanoR_1.17.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MetaVolcanoR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MetaVolcanoR
Bioc Package Browser https://code.bioconductor.org/browse/MetaVolcanoR/
Package Short Url https://bioconductor.org/packages/MetaVolcanoR/
Package Downloads Report Download Stats