MetaboAnnotatoR
Automated Annotation of All-Ion Fragmentation LC-MS Metabolomic Features
Bioconductor version: 3.24 · Package version: 1.1.2
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Performs feature annotations on LC-MS All-ion fragmentation datasets using fragment ion libraries.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MetaboAnnotatoR")Details
| Maintainer | Goncalo Graca <ggraca22@gmail.com> |
| Author | Goncalo Graca [aut, cre] (ORCID: <https://orcid.org/0000-0002-0876-3876>), Yuheng (Rene) Cai [aut], Timothy Ebbels [aut] |
| License | GPL-3 |
| URL | https://github.com/gggraca/MetaboAnnotatoR |
| Bug Reports | https://github.com/gggraca/MetaboAnnotatoR/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | MassSpectrometry, Metabolomics, Software |
| Package Short Url | https://bioconductor.org/packages/MetaboAnnotatoR/ |
Citation
From within R, enter citation("MetaboAnnotatoR"):
Goncalo Graca, Yuheng Cai, Timothy Ebbels. MetaboAnnotatoR: Automated Annotation of All-Ion Fragmentation LC-MS Metabolomic Features. doi:10.18129/B9.bioc.MetaboAnnotatoR, R package version 1.1.2, https://bioconductor.org/packages/MetaboAnnotatoR.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | MetaboAnnotatoR_1.1.2.tar.gz |
| Windows binary (x86_64) | MetaboAnnotatoR_1.1.2.zip |
| macOS binary (arm64) | MetaboAnnotatoR_1.1.2.tgz |
| macOS binary (x86_64) | MetaboAnnotatoR_1.1.2.tgz |
Dependencies
Depends: R (>= 4.5.0), xcms (>= 3.0.0), MSnbase (>= 2.16.1), ProtGenerics
Imports: ggplot2 (>= 3.3.3), gridExtra (>= 2.3)
Suggests: rmarkdown, knitr, testthat (>= 3.0.0), BiocStyle, MsDataHub