MsExperiment
Infrastructure for Mass Spectrometry Experiments
Bioconductor version: 3.24 · Package version: 1.15.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Infrastructure to store and manage all aspects related to a complete proteomics or metabolomics mass spectrometry (MS) experiment. The MsExperiment package provides light-weight and flexible containers for MS experiments building on the new MS infrastructure provided by the Spectra, QFeatures and related packages. Along with raw data representations, links to original data files and sample annotations, additional metadata or annotations can also be stored within the MsExperiment container. To guarantee maximum flexibility only minimal constraints are put on the type and content of the data within the containers.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MsExperiment")Details
| Maintainer | Laurent Gatto <laurent.gatto@uclouvain.be> |
| Author | Laurent Gatto [aut, cre] (ORCID: <https://orcid.org/0000-0002-1520-2268>), Johannes Rainer [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Sebastian Gibb [aut] (ORCID: <https://orcid.org/0000-0001-7406-4443>), Tuomas Borman [ctb] (ORCID: <https://orcid.org/0000-0002-8563-8884>) |
| License | Artistic-2.0 |
| URL | https://github.com/RforMassSpectrometry/MsExperiment |
| Bug Reports | https://github.com/RforMassSpectrometry/MsExperiment/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, ExperimentalDesign, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software |
| Package Short Url | https://bioconductor.org/packages/MsExperiment/ |
Citation
From within R, enter citation("MsExperiment"):
Laurent Gatto, Johannes Rainer, Sebastian Gibb. MsExperiment: Infrastructure for Mass Spectrometry Experiments. doi:10.18129/B9.bioc.MsExperiment, R package version 1.15.0, https://bioconductor.org/packages/MsExperiment.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | MsExperiment_1.15.0.tar.gz |
| Windows binary (x86_64) | MsExperiment_1.15.0.zip |
| macOS binary (arm64) | MsExperiment_1.15.0.tgz |
| macOS binary (x86_64) | MsExperiment_1.15.0.tgz |
Dependencies
Depends: R (>= 4.2), ProtGenerics (>= 1.35.2)
Imports: methods, S4Vectors, IRanges, Spectra, SummarizedExperiment, QFeatures, DBI, BiocGenerics
Suggests: testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19), rmarkdown, rpx, mzR, MsDataHub, MsBackendSql (>= 1.3.2), RSQLite