OmaDB
R wrapper for the OMA REST API
Bioconductor version: 3.24 · Package version: 2.29.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
A package for the orthology prediction data download from OMA database.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("OmaDB")Details
| Maintainer | Klara Kaleb <klara.kaleb18@ic.ac.uk>, Adrian Altenhoff <adrian.altenhoff@inf.ethz.ch> |
| Author | Klara Kaleb |
| License | GPL-3 |
| URL | https://github.com/DessimozLab/OmaDB |
| Bug Reports | https://github.com/DessimozLab/OmaDB/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Annotation, ComparativeGenomics, FunctionalGenomics, FunctionalPrediction, GO, Genetics, Software |
| Package Short Url | https://bioconductor.org/packages/OmaDB/ |
Citation
From within R, enter citation("OmaDB"):
Klara Kaleb. OmaDB: R wrapper for the OMA REST API. doi:10.18129/B9.bioc.OmaDB, R package version 2.29.0, https://bioconductor.org/packages/OmaDB.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
- Exploring Hierarchical orthologous groups with OmaDB
- Exploring Taxonomic trees with OmaDB
- Get started with OmaDB
- Sequence Analysis with OmaDB
Download
Follow the installation instructions to use this package in your R session.
| Source package | OmaDB_2.29.0.tar.gz |
| Windows binary (x86_64) | OmaDB_2.29.0.zip |
| macOS binary (arm64) | OmaDB_2.29.0.tgz |
| macOS binary (x86_64) | OmaDB_2.29.0.tgz |
Dependencies
Depends: R (>= 3.5), httr (>= 1.2.1), plyr (>= 1.8.4)
Imports: utils, ape, Biostrings, GenomicRanges, IRanges, methods, topGO, jsonlite
Reverse dependencies
Suggests Me (2): orthogene, PhyloProfile