OrderedList

DOI: 10.18129/B9.bioc.OrderedList    

This is the development version of OrderedList; for the stable release version, see OrderedList.

Similarities of Ordered Gene Lists

Bioconductor version: Development (3.11)

Detection of similarities between ordered lists of genes. Thereby, either simple lists can be compared or gene expression data can be used to deduce the lists. Significance of similarities is evaluated by shuffling lists or by resampling in microarray data, respectively.

Author: Xinan Yang, Stefanie Scheid, Claudio Lottaz

Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>

Citation (from within R, enter citation("OrderedList")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("OrderedList")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DifferentialExpression, Microarray, MultipleComparison, Software
Version 1.59.0
In Bioconductor since BioC 1.8 (R-2.3) (13.5 years)
License GPL (>= 2)
Depends R (>= 2.1.0), Biobase(>= 1.5.12), twilight(>= 1.9.2), methods
Imports Biobase, graphics, methods, stats, twilight
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://compdiag.molgen.mpg.de/software/index.shtml
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/OrderedList
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OrderedList
Package Short Url https://bioconductor.org/packages/OrderedList/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: