PanomiR
This is the development version of PanomiR; for the stable release version, see PanomiR.
All Bioconductor versions of PanomiR
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15
Detection of miRNAs that regulate interacting groups of pathways
Bioconductor version: 3.24 · Package version: 1.17.0
PanomiR is a package to detect miRNAs that target groups of pathways from gene expression data. This package provides functionality for generating pathway activity profiles, determining differentially activated pathways between user-specified conditions, determining clusters of pathways via the PCxN package, and generating miRNAs targeting clusters of pathways. These function can be used separately or sequentially to analyze RNA-Seq data.
Author: Pourya Naderi [aut, cre], Yue Yang (Alan) Teo [aut], Ilya Sytchev [aut], Winston Hide [aut]
Maintainer: Pourya Naderi <pouryany at gmail.com>
Citation
From within R, enter citation("PanomiR"):
Pourya Naderi, Yue Yang Teo, Ilya Sytchev, Winston Hide. PanomiR: Detection of miRNAs that regulate interacting groups of pathways. doi:10.18129/B9.bioc.PanomiR, R package version 1.17.0, https://bioconductor.org/packages/PanomiR.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("PanomiR")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.17.0 |
| License | MIT + file LICENSE |
| URL | https://github.com/pouryany/PanomiR |
| Bug Reports | https://github.com/pouryany/PanomiR/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.15 (R-4.2) (4 years) |
| Downloads rank | 1463 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneExpression, GeneSetEnrichment, GeneTarget, Pathways, Software, miRNA |
| Package Short Url | https://bioconductor.org/packages/PanomiR/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PanomiR")| miRNA and pathway analysis with PanomiR | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | PanomiR_1.17.0.tar.gz |
| Windows binary (x86_64) | PanomiR_1.17.0.zip |
| macOS binary (arm64) | PanomiR_1.17.0.tgz |
| macOS binary (x86_64) | PanomiR_1.17.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PanomiR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PanomiR |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.2.0)
Imports: clusterProfiler, dplyr, forcats, GSEABase, igraph, limma, metap, org.Hs.eg.db, parallel, preprocessCore, RColorBrewer, rlang, tibble, withr, utils
Suggests: testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown