RNAmodR.AlkAnilineSeq
Detection of m7G, m3C and D modification by AlkAnilineSeq
Bioconductor version: 3.24 · Package version: 1.27.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
RNAmodR.AlkAnilineSeq implements the detection of m7G, m3C and D modifications on RNA from experimental data generated with the AlkAnilineSeq protocol. The package builds on the core functionality of the RNAmodR package to detect specific patterns of the modifications in high throughput sequencing data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RNAmodR.AlkAnilineSeq")Details
| Maintainer | Felix G.M. Ernst <felix.gm.ernst@outlook.com> |
| Author | Felix G.M. Ernst [aut, cre] (ORCID: <https://orcid.org/0000-0001-5064-0928>), Denis L.J. Lafontaine [ctb, fnd] |
| License | Artistic-2.0 |
| URL | https://github.com/FelixErnst/RNAmodR.AlkAnilineSeq |
| Bug Reports | https://github.com/FelixErnst/RNAmodR.AlkAnilineSeq/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Sequencing, Software, Visualization, WorkflowStep |
| Package Short Url | https://bioconductor.org/packages/RNAmodR.AlkAnilineSeq/ |
Citation
From within R, enter citation("RNAmodR.AlkAnilineSeq"):
Felix G.M. Ernst. RNAmodR.AlkAnilineSeq: Detection of m7G, m3C and D modification by AlkAnilineSeq. doi:10.18129/B9.bioc.RNAmodR.AlkAnilineSeq, R package version 1.27.0, https://bioconductor.org/packages/RNAmodR.AlkAnilineSeq.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | RNAmodR.AlkAnilineSeq_1.27.0.tar.gz |
| Windows binary (x86_64) | RNAmodR.AlkAnilineSeq_1.27.0.zip |
| macOS binary (arm64) | RNAmodR.AlkAnilineSeq_1.27.0.tgz |
| macOS binary (x86_64) | RNAmodR.AlkAnilineSeq_1.27.0.tgz |
Dependencies
Depends: R (>= 4.0), RNAmodR (>= 1.5.3)
Imports: methods, S4Vectors, IRanges, BiocGenerics, GenomicRanges, Gviz
Suggests: BiocStyle, knitr, rmarkdown, testthat, rtracklayer, Biostrings, Seqinfo, RNAmodR.Data
Reverse dependencies
Suggests Me (1): RNAmodR.ML