RcwlPipelines

Bioinformatics pipelines based on Rcwl

Bioconductor version: 3.24 · Package version: 1.29.0

Other Bioconductor versions

devel is the development version; release is the current stable one.

A collection of Bioinformatics tools and pipelines based on R and the Common Workflow Language.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RcwlPipelines")

Details

Maintainer	Qiang Hu <qiang.hu@roswellpark.org>
Author	Qiang Hu [aut, cre], Qian Liu [aut], Shuang Gao [aut]
License	GPL-2
System Requirements	nodejs
Source branch	devel
Build report	Bioconductor build system, r-universe
biocViews	Alignment, DNASeq, DataImport, ImmunoOncology, Preprocessing, QualityControl, RNASeq, Software, WorkflowStep
Package Short Url	https://bioconductor.org/packages/RcwlPipelines/

Citation

From within R, enter citation("RcwlPipelines"):

Qiang Hu, Qian Liu, Shuang Gao. RcwlPipelines: Bioinformatics pipelines based on Rcwl. doi:10.18129/B9.bioc.RcwlPipelines, R package version 1.29.0, https://bioconductor.org/packages/RcwlPipelines.

Generated from the package metadata; it may differ from the package's own citation.

Documentation

RcwlPipelines: Bioinformatics tools and pipelines based on Rcwl

Download

Follow the installation instructions to use this package in your R session.

Source package	RcwlPipelines_1.29.0.tar.gz
macOS binary (arm64)	RcwlPipelines_1.29.0.tgz
macOS binary (x86_64)	RcwlPipelines_1.29.0.tgz

Dependencies

Depends: R (>= 3.6), Rcwl, BiocFileCache

Imports: rappdirs, methods, utils, git2r, httr, S4Vectors

Suggests: testthat, knitr, rmarkdown, BiocStyle

Reverse dependencies

Imports Me (1): ReUseData