Rega
R Interface to European Genome-Phenome Archive
Bioconductor version: 3.24 · Package version: 1.1.1
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The European Genome-phenome Archive (EGA) provides long-term storage and controlled sharing of personally identifiable genetic data. The Rega package offers a streamlined and extensible R interface to the EGA API, facilitating the programmatic upload of metadata. GEO-like Excel submission template is provided as a default method of organizing submission metadata.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rega")Details
| Maintainer | Igor Cervenka <igor.cervenka@unibas.ch> |
| Author | Igor Cervenka [aut, cre] (ORCID: <https://orcid.org/0000-0002-9438-5161>), Athimed El Taher [aut] (ORCID: <https://orcid.org/0000-0003-2424-8476>), Robert Ivanek [aut] (ORCID: <https://orcid.org/0000-0002-8403-056X>) |
| License | Artistic-2.0 |
| URL | https://github.com/ivanek/Rega |
| Bug Reports | https://github.com/ivanek/Rega/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Infrastructure, Software, ThirdPartyClient |
| Package Short Url | https://bioconductor.org/packages/Rega/ |
Citation
From within R, enter citation("Rega"):
Igor Cervenka, Athimed El Taher, Robert Ivanek. Rega: R Interface to European Genome-Phenome Archive. doi:10.18129/B9.bioc.Rega, R package version 1.1.1, https://bioconductor.org/packages/Rega.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | Rega_1.1.1.tar.gz |
| Windows binary (x86_64) | Rega_1.1.1.zip |
| macOS binary (arm64) | Rega_1.1.1.tgz |
| macOS binary (x86_64) | Rega_1.1.1.tgz |