SEPIRA

DOI: 10.18129/B9.bioc.SEPIRA  

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of SEPIRA; for the stable release version, see SEPIRA.

Systems EPigenomics Inference of Regulatory Activity

Bioconductor version: Development (3.19)

SEPIRA (Systems EPigenomics Inference of Regulatory Activity) is an algorithm that infers sample-specific transcription factor activity from the genome-wide expression or DNA methylation profile of the sample.

Author: Yuting Chen [aut, cre], Andrew Teschendorff [aut]

Maintainer: Yuting Chen <cytwarmmay at hotmail.com>

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SEPIRA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	GeneExpression, GeneRegulation, GeneTarget, Network, NetworkInference, Software, Transcription
Version	1.22.0
In Bioconductor since	BioC 3.7 (R-3.5) (5.5 years)
License	GPL-3
Depends	R (>= 3.5.0)
Imports	limma(>= 3.32.5), corpcor (>= 1.6.9), parallel (>= 3.3.1), stats
LinkingTo
Suggests	knitr, rmarkdown, testthat, igraph
SystemRequirements
Enhances
URL
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary	SEPIRA_1.22.0.zip
macOS Binary (x86_64)	SEPIRA_1.22.0.tgz
macOS Binary (arm64)	SEPIRA_1.21.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SEPIRA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SEPIRA
Package Short Url	https://bioconductor.org/packages/SEPIRA/
Package Downloads Report	Download Stats