|
|
|
|
|
|
|
This is the development version of SimBindProfiles; for the stable release version, see SimBindProfiles.
Bioconductor version: Development (3.19)
SimBindProfiles identifies common and unique binding regions in genome tiling array data. This package does not rely on peak calling, but directly compares binding profiles processed on the same array platform. It implements a simple threshold approach, thus allowing retrieval of commonly and differentially bound regions between datasets as well as events of compensation and increased binding.
Author: Bettina Fischer, Enrico Ferrero, Robert Stojnic, Steve Russell
Maintainer: Bettina Fischer <bef22 at cam.ac.uk>
Citation (from within R,
enter citation("SimBindProfiles")
):
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("SimBindProfiles")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | Microarray, Software |
Version | 1.41.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (10 years) |
License | GPL-3 |
Depends | R (>= 2.10), methods, Ringo |
Imports | limma, mclust, Biobase |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/SimBindProfiles |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SimBindProfiles |
Package Short Url | https://bioconductor.org/packages/SimBindProfiles/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: