SimBindProfiles

DOI: 10.18129/B9.bioc.SimBindProfiles  

This is the development version of SimBindProfiles; for the stable release version, see SimBindProfiles.

Similar Binding Profiles

Bioconductor version: Development (3.19)

SimBindProfiles identifies common and unique binding regions in genome tiling array data. This package does not rely on peak calling, but directly compares binding profiles processed on the same array platform. It implements a simple threshold approach, thus allowing retrieval of commonly and differentially bound regions between datasets as well as events of compensation and increased binding.

Author: Bettina Fischer, Enrico Ferrero, Robert Stojnic, Steve Russell

Maintainer: Bettina Fischer <bef22 at cam.ac.uk>

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SimBindProfiles")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Microarray, Software
Version	1.41.0
In Bioconductor since	BioC 2.13 (R-3.0) (10 years)
License	GPL-3
Depends	R (>= 2.10), methods, Ringo
Imports	limma, mclust, Biobase
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/SimBindProfiles
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SimBindProfiles
Package Short Url	https://bioconductor.org/packages/SimBindProfiles/
Package Downloads Report	Download Stats