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TPP2D

Detection of ligand-protein interactions from 2D thermal profiles (DLPTP)

Bioconductor version: 3.24 · Package version: 1.29.0

Other Bioconductor versions

devel is the development version; release is the current stable one.

3.24 (devel), 3.23 (release)

Detection of ligand-protein interactions from 2D thermal profiles (DLPTP), Performs an FDR-controlled analysis of 2D-TPP experiments by functional analysis of dose-response curves across temperatures.

DOI: 10.18129/B9.bioc.TPP2D

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TPP2D")

Details

MaintainerNils Kurzawa <nilskurzawa@gmail.com>
AuthorNils Kurzawa [aut, cre], Holger Franken [aut], Simon Anders [aut], Wolfgang Huber [aut], Mikhail M. Savitski [aut]
LicenseGPL-3
URLhttp://bioconductor.org/packages/TPP2D
Bug Reportshttps://support.bioconductor.org/
Source branchdevel
Build report Bioconductor build system, r-universe
biocViewsDataImport, Proteomics, Software
Package Short Url https://bioconductor.org/packages/TPP2D/

Citation

From within R, enter citation("TPP2D"):

Nils Kurzawa, Holger Franken, Simon Anders, Wolfgang Huber, Mikhail M. Savitski. TPP2D: Detection of ligand-protein interactions from 2D thermal profiles (DLPTP). doi:10.18129/B9.bioc.TPP2D, R package version 1.29.0, https://bioconductor.org/packages/TPP2D.

Generated from the package metadata; it may differ from the package's own citation.

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageTPP2D_1.29.0.tar.gz
Windows binary (x86_64)TPP2D_1.29.0.zip
macOS binary (arm64)TPP2D_1.29.0.tgz
macOS binary (x86_64)TPP2D_1.29.0.tgz
Dependencies

Depends: R (>= 3.6.0), stats, utils, dplyr, methods

Imports: ggplot2, tidyr, foreach, doParallel, openxlsx, stringr, RCurl, parallel, MASS, BiocParallel, limma

Suggests: knitr, testthat, rmarkdown, BiocStyle