DOI: 10.18129/B9.bioc.TxRegInfra    

This is the development version of TxRegInfra; for the stable release version, see TxRegInfra.

Metadata management for multiomic specification of transcriptional regulatory networks

Bioconductor version: Development (3.12)

This package provides interfaces to genomic metadata employed in regulatory network creation, with a focus on noSQL solutions. Currently quantitative representations of eQTLs, DnaseI hypersensitivity sites and digital genomic footprints are assembled using an out-of-memory extension of the RaggedExperiment API.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("TxRegInfra")):


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HTML R Script shims in TxRegInfra
HTML R Script TxRegInfra -- classes and methods for TxRegQuery
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biocViews Network, Software
Version 1.9.0
In Bioconductor since BioC 3.7 (R-3.5) (2.5 years)
License Artistic-2.0
Depends R (>= 3.5), RaggedExperiment(>= 1.3.11), mongolite
Imports methods, rjson, GenomicRanges, IRanges, BiocParallel, GenomeInfoDb, S4Vectors, SummarizedExperiment, utils
Suggests knitr, GenomicFiles, EnsDb.Hsapiens.v75, testthat, shiny, biovizBase(>= 1.27.2), Gviz, AnnotationFilter, ensembldb, ontoProc, rjson, graph, TFutils(>= 1.5.4)
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Source Package TxRegInfra_1.9.0.tar.gz
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Package Short Url https://bioconductor.org/packages/TxRegInfra/
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