VariantTools
Tools for Exploratory Analysis of Variant Calls
Bioconductor version: 3.24 · Package version: 1.55.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Explore, diagnose, and compare variant calls using filters.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("VariantTools")Details
| Maintainer | Michael Lawrence <lawremi@gmail.com> |
| Author | Michael Lawrence, Jeremiah Degenhardt, Robert Gentleman |
| License | Artistic-2.0 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneticVariability, Genetics, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/VariantTools/ |
Citation
From within R, enter citation("VariantTools"):
Michael Lawrence, Jeremiah Degenhardt, Robert Gentleman. VariantTools: Tools for Exploratory Analysis of Variant Calls. doi:10.18129/B9.bioc.VariantTools, R package version 1.55.0, https://bioconductor.org/packages/VariantTools.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | VariantTools_1.55.0.tar.gz |
| macOS binary (arm64) | VariantTools_1.55.0.tgz |
Dependencies
Depends: R (>= 3.5.0), S4Vectors (>= 0.17.33), IRanges (>= 2.13.12), GenomicRanges (>= 1.31.8), VariantAnnotation (>= 1.11.16), methods
Imports: Rsamtools (>= 1.31.2), BiocGenerics, Biostrings, parallel, GenomicFeatures (>= 1.31.3), Matrix, rtracklayer (>= 1.39.7), BiocParallel, GenomeInfoDb, BSgenome, Biobase
Suggests: RUnit, LungCancerLines (>= 0.0.6), RBGL, graph, gmapR (>= 1.21.3), TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db
Reverse dependencies
Suggests Me (1): VariantToolsData