ZarrArray
Bring Zarr datasets in R as DelayedArray objects
Bioconductor version: 3.24 · Package version: 1.1.7
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The ZarrArray package leverages the Rarr package to bring Zarr datasets in R as DelayedArray objects. The main class in the package is the ZarrArray class. A ZarrArray object is an array-like object that represents a Zarr dataset in R. ZarrArray objects are DelayedArray derivatives and therefore support all operations (delayed or block-processed) supported by DelayedArray objects.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ZarrArray")Details
| Maintainer | Hervé Pagès <hpages.on.github@gmail.com> |
| Author | Hervé Pagès [aut, cre] (ORCID: <https://orcid.org/0009-0002-8272-4522>), Mike Smith [aut] (ORCID: <https://orcid.org/0000-0002-7800-3848>), Hugo Gruson [aut] (ORCID: <https://orcid.org/0000-0002-4094-1476>), Artür Manukyan [aut] (ORCID: <https://orcid.org/0000-0002-0441-9517>), Levi Waldron [fnd] (ORCID: <https://orcid.org/0000-0003-2725-0694>) |
| License | Artistic-2.0 |
| URL | https://bioconductor.org/packages/ZarrArray |
| Bug Reports | https://github.com/Bioconductor/ZarrArray/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, DataRepresentation, Infrastructure, Software |
| Package Short Url | https://bioconductor.org/packages/ZarrArray/ |
Citation
From within R, enter citation("ZarrArray"):
Hervé Pagès, Mike Smith, Hugo Gruson, Artür Manukyan. ZarrArray: Bring Zarr datasets in R as DelayedArray objects. doi:10.18129/B9.bioc.ZarrArray, R package version 1.1.7, https://bioconductor.org/packages/ZarrArray.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ZarrArray_1.1.7.tar.gz |
| Windows binary (x86_64) | ZarrArray_1.1.7.zip |
| macOS binary (arm64) | ZarrArray_1.1.7.tgz |
| macOS binary (x86_64) | ZarrArray_1.1.7.tgz |
Dependencies
Depends: R (>= 3.4), methods, SparseArray, DelayedArray (>= 0.39.4)
Imports: stats, tools, BiocGenerics (>= 0.59.12), S4Vectors, IRanges, S4Arrays, Rarr (>= 2.1.9)
Suggests: paws.storage, HDF5Array, testthat, anndataR, knitr, rmarkdown, BiocStyle
Reverse dependencies
Imports Me (2): ImageArray, spatialdataR
Suggests Me (3): BiocDuckDB, BiocGenerics, DelayedArray