Registration Open for Bioc2024

alabaster.matrix

This is the development version of alabaster.matrix; for the stable release version, see alabaster.matrix.

Load and Save Artifacts from File


Bioconductor version: Development (3.20)

Save matrices, arrays and similar objects into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("alabaster.matrix")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("alabaster.matrix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alabaster.matrix")
Saving and loading arrays HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews DataImport, DataRepresentation, Software
Version 1.5.0
In Bioconductor since BioC 3.17 (R-4.3) (1 year)
License MIT + file LICENSE
Depends alabaster.base
Imports methods, BiocGenerics, S4Vectors, DelayedArray(>= 0.27.2), S4Arrays, SparseArray, rhdf5(>= 2.47.1), HDF5Array, Matrix, Rcpp
System Requirements
URL
See More
Suggests testthat, knitr, BiocStyle, chihaya, BiocSingular, ResidualMatrix
Linking To Rcpp
Enhances
Depends On Me
Imports Me alabaster, alabaster.se, celldex, scRNAseq
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package alabaster.matrix_1.5.0.tar.gz
Windows Binary alabaster.matrix_1.5.0.zip (64-bit only)
macOS Binary (x86_64) alabaster.matrix_1.5.0.tgz
macOS Binary (arm64) alabaster.matrix_1.3.13.tgz
Source Repository git clone https://git.bioconductor.org/packages/alabaster.matrix
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/alabaster.matrix
Bioc Package Browser https://code.bioconductor.org/browse/alabaster.matrix/
Package Short Url https://bioconductor.org/packages/alabaster.matrix/
Package Downloads Report Download Stats