annoLinker
This is the development version of annoLinker; for the stable release version, see annoLinker.
All Bioconductor versions of annoLinker
3.24 (devel), 3.23 (release)
Annotating genomic regions through chromatin interaction links
Bioconductor version: 3.24 · Package version: 1.1.0
Fast annotation of genomic peaks using DNA interaction data by constructing interaction networks with igraph, where peaks overlapping any node in a connected subgraph are annotated with all genes in that subgraph. The annotation evidence could be visualized as either a network graph or a genomic track integrated with gene annotation information.
Author: Jianhong Ou [aut, cre] 
, Kenneth Poss [aut, fnd]
Maintainer: Jianhong Ou <jou at morgridge.org>
Citation
From within R, enter citation("annoLinker"):
Jianhong Ou, Kenneth Poss. annoLinker: Annotating genomic regions through chromatin interaction links. doi:10.18129/B9.bioc.annoLinker, R package version 1.1.0, https://bioconductor.org/packages/annoLinker.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("annoLinker")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.1.0 |
| License | GPL-3 |
| URL | https://github.com/jianhong/annoLinker |
| Bug Reports | https://github.com/jianhong/annoLinker/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.23 (R-4.6) (less than a year) |
| Downloads rank | 2266 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Annotation, Network, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/annoLinker/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("annoLinker")| annoLinker Vignette: Annotating genomic regions through chromatin interaction links | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | annoLinker_1.1.0.tar.gz |
| Windows binary (x86_64) | annoLinker_1.1.0.zip |
| macOS binary (arm64) | annoLinker_1.1.0.tgz |
| macOS binary (x86_64) | annoLinker_1.1.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/annoLinker |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/annoLinker |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.5.0)
Imports: AnnotationDbi, BiocGenerics, future.apply, GenomicRanges, GenomeInfoDb, igraph, IRanges, InteractionSet, methods, progressr, S4Vectors, Seqinfo, trackViewer, visNetwork
Suggests: BiocStyle, knitr, rtracklayer, rmarkdown, testthat, TxDb.Drerio.UCSC.danRer10.refGene, org.Dr.eg.db, future