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This is the development version of bnbc; for the stable release version, see bnbc.

Bandwise normalization and batch correction of Hi-C data

Bioconductor version: Development (3.19)

Tools to normalize (several) Hi-C data from replicates.

Author: Kipper Fletez-Brant [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Kipper Fletez-Brant <cafletezbrant at>

Citation (from within R, enter citation("bnbc")):


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Reference Manual PDF


biocViews HiC, Normalization, Preprocessing, Software
Version 1.25.1
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License Artistic-2.0
Depends R (>= 3.5.0), methods, BiocGenerics, SummarizedExperiment, GenomicRanges
Imports Rcpp (>= 0.12.12), IRanges, rhdf5, data.table, GenomeInfoDb, S4Vectors, matrixStats, preprocessCore, sva, parallel, EBImage, utils, HiCBricks
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Suggests BiocStyle, knitr, rmarkdown, RUnit, BSgenome.Hsapiens.UCSC.hg19
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