compEpiTools
This is the development version of compEpiTools; for the stable release version, see compEpiTools.
All Bioconductor versions of compEpiTools
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0
Tools for computational epigenomics
Bioconductor version: 3.24 · Package version: 1.47.0
Tools for computational epigenomics developed for the analysis, integration and simultaneous visualization of various (epi)genomics data types across multiple genomic regions in multiple samples.
Author: Mattia Pelizzola [aut], Kamal Kishore [aut], Mattia Furlan [ctb, cre]
Maintainer: Mattia Furlan <mattia.furlan at iit.it>
Citation
From within R, enter citation("compEpiTools"):
Mattia Pelizzola, Kamal Kishore. compEpiTools: Tools for computational epigenomics. doi:10.18129/B9.bioc.compEpiTools, R package version 1.47.0, https://bioconductor.org/packages/compEpiTools.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("compEpiTools")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.47.0 |
| License | GPL |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.0 (R-3.1) (11 years) |
| Downloads rank | 567 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Coverage, GeneExpression, GenomeAnnotation, Sequencing, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/compEpiTools/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("compEpiTools")| compEpiTools | R Script | |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | compEpiTools_1.47.0.tar.gz |
| Windows binary (x86_64) | compEpiTools_1.47.0.zip |
| macOS binary (arm64) | compEpiTools_1.47.0.tgz |
| macOS binary (x86_64) | compEpiTools_1.47.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/compEpiTools |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/compEpiTools |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.5.0), methods, topGO, GenomicRanges
Imports: AnnotationDbi, BiocGenerics, Biostrings, Rsamtools, parallel, grDevices, gplots, IRanges, GenomicFeatures, XVector, methylPipe, GO.db, S4Vectors, Seqinfo
Suggests: BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene, org.Mm.eg.db, knitr, rtracklayer