gDRimport
Package for handling the import of dose-response data
Bioconductor version: 3.24 · Package version: 1.11.6
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The package is a part of the gDR suite. It helps to prepare raw drug response data for downstream processing. It mainly contains helper functions for importing/loading/validating dose-response data provided in different file formats.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gDRimport")Details
| Maintainer | Arkadiusz Gladki <gladki.arkadiusz@gmail.com> |
| Author | Arkadiusz Gladki [aut, cre] (ORCID: <https://orcid.org/0000-0002-7059-6378>), Bartosz Czech [aut] (ORCID: <https://orcid.org/0000-0002-9908-3007>), Marc Hafner [aut] (ORCID: <https://orcid.org/0000-0003-1337-7598>), Sergiu Mocanu [aut], Dariusz Scigocki [aut], Allison Vuong [aut], Luca Gerosa [aut] (ORCID: <https://orcid.org/0000-0001-6805-9410>), Janina Smola [aut] |
| License | Artistic-2.0 |
| URL | https://github.com/gdrplatform/gDRimport, https://gdrplatform.github.io/gDRimport/ |
| Bug Reports | https://github.com/gdrplatform/gDRimport/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, Infrastructure, Software |
| Package Short Url | https://bioconductor.org/packages/gDRimport/ |
Citation
From within R, enter citation("gDRimport"):
Arkadiusz Gladki, Bartosz Czech, Marc Hafner, Sergiu Mocanu, Dariusz Scigocki, Allison Vuong, Luca Gerosa, Janina Smola. gDRimport: Package for handling the import of dose-response data. doi:10.18129/B9.bioc.gDRimport, R package version 1.11.6, https://bioconductor.org/packages/gDRimport.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
- Converting a gDR-generated MultiAssayExperiment object into a PharmacoSet
- Converting PharmacoSet Drug Response Data into gDR object
- gDRimport
Download
Follow the installation instructions to use this package in your R session.
| Source package | gDRimport_1.11.6.tar.gz |
| Windows binary (x86_64) | gDRimport_1.11.6.zip |
| macOS binary (arm64) | gDRimport_1.11.6.tgz |
| macOS binary (x86_64) | gDRimport_1.11.6.tgz |
Dependencies
Depends: R (>= 4.2)
Imports: assertthat, BumpyMatrix, checkmate, CoreGx, PharmacoGx, data.table, futile.logger, gDRutils (>= 1.7.1), magrittr, methods, MultiAssayExperiment, readxl, rio, S4Vectors, stats, stringi, SummarizedExperiment, tibble, tools, utils, XML, yaml, openxlsx, qs2
Suggests: BiocStyle, gDRtestData (>= 1.7.1), gDRstyle (>= 1.7.1), knitr, purrr, testthat