geneRecommender

This is the development version of geneRecommender; for the stable release version, see geneRecommender.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

A gene recommender algorithm to identify genes coexpressed with a query set of genes

Bioconductor version: Development (3.24)

This package contains a targeted clustering algorithm for the analysis of microarray data. The algorithm can aid in the discovery of new genes with similar functions to a given list of genes already known to have closely related functions.

Author: Gregory J. Hather <ghather at gmail.com>, with contributions from Art B. Owen <art at stat.stanford.edu> and Terence P. Speed <terry at stat.berkeley.edu>

Maintainer: Greg Hather <ghather at gmail.com>

Citation (from within R, enter citation("geneRecommender")):

Gregory J. Hather, with contributions from Art B. Owen and Terence P. Speed. geneRecommender: A gene recommender algorithm to identify genes coexpressed with a query set of genes. doi:10.18129/B9.bioc.geneRecommender, R package version 1.85.0, https://bioconductor.org/packages/geneRecommender.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("geneRecommender")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("geneRecommender")

Using the geneRecommender Package	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Clustering, Microarray, Software
Version	1.85.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 21.5 years)
License	GPL (>= 2)
Depends	R (>= 1.8.0), Biobase (>= 1.4.22), methods
Imports	Biobase, methods, stats
System Requirements
URL

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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	geneRecommender_1.85.0.tar.gz
Windows Binary (x86_64)	geneRecommender_1.85.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	geneRecommender_1.85.0.tgz
macOS Binary (sonoma-arm64)	geneRecommender_1.85.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/geneRecommender
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/geneRecommender
Package Short Url	https://bioconductor.org/packages/geneRecommender/
Package Downloads Report	Download Stats