geyser
This is the development version of geyser; for the stable release version, see geyser.
All Bioconductor versions of geyser
3.24 (devel), 3.23 (release), 3.22, 3.21
Gene Expression displaYer of SummarizedExperiment in R
Bioconductor version: 3.24 · Package version: 1.5.0
Lightweight Expression displaYer (plotter / viewer) of SummarizedExperiment object in R. This package provides a quick and easy Shiny-based GUI to empower a user to use a SummarizedExperiment object to view and plot gene expression data.
Author: David McGaughey [aut, cre] 
Maintainer: David McGaughey <mcgaughey at gmail.com>
Citation
From within R, enter citation("geyser"):
David McGaughey. geyser: Gene Expression displaYer of SummarizedExperiment in R. doi:10.18129/B9.bioc.geyser, R package version 1.5.0, https://bioconductor.org/packages/geyser.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("geyser")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.5.0 |
| License | CC0 |
| URL | https://github.com/davemcg/geyser |
| Bug Reports | https://github.com/davemcg/geyser/issues |
| System Requirements | pandoc (>= 2.8) - https://pandoc.org |
| Last updated | 2026-09-02 |
| In Bioconductor since | BioC 3.21 (R-4.5) (1 year) |
| Downloads rank | 2150 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | GUI, GeneExpression, ShinyApps, Software |
| Package Short Url | https://bioconductor.org/packages/geyser/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("geyser")| Gene Expression displaY of SummarizedExperiment in R | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | geyser_1.5.0.tar.gz |
| Windows binary (x86_64) | geyser_1.5.0.zip |
| macOS binary (arm64) | geyser_1.5.0.tgz |
| macOS binary (x86_64) | geyser_1.5.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/geyser |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/geyser |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.5.0)
Imports: bslib (>= 0.6.0), BiocStyle, ComplexHeatmap, cowplot, dplyr, DT, ggbeeswarm, ggplot2, ggrepel, ggh4x, htmltools, magrittr, pals, RColorBrewer, rlang, R.utils, shiny, shinyjs, S4Vectors, SummarizedExperiment, tibble, tidyselect, tidyr, yaml
Suggests: airway, knitr, DESeq2, rmarkdown, stringr, testthat (>= 3.0.0)