ggseqalign
Minimal Visualization of Sequence Alignments
Bioconductor version: 3.24 · Package version: 1.7.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Simple visualizations of alignments of DNA or AA sequences as well as arbitrary strings. Compatible with Biostrings and ggplot2. The plots are fully customizable using ggplot2 modifiers such as theme().
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ggseqalign")Details
| Maintainer | Simeon Lim Rossmann <simeon.rossmann@nmbu.no> |
| Author | Simeon Lim Rossmann [aut, cre] (ORCID: <https://orcid.org/0000-0003-0435-8221>) |
| License | Artistic-2.0 |
| URL | https://github.com/simeross/ggseqalign |
| Bug Reports | https://github.com/simeross/ggseqalign/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Alignment, MultipleSequenceAlignment, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/ggseqalign/ |
Citation
From within R, enter citation("ggseqalign"):
Simeon Lim Rossmann. ggseqalign: Minimal Visualization of Sequence Alignments. doi:10.18129/B9.bioc.ggseqalign, R package version 1.7.0, https://bioconductor.org/packages/ggseqalign.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ggseqalign_1.7.0.tar.gz |
| Windows binary (x86_64) | ggseqalign_1.7.0.zip |
| macOS binary (arm64) | ggseqalign_1.7.0.tgz |
| macOS binary (x86_64) | ggseqalign_1.7.0.tgz |
Dependencies
Depends: R (>= 4.4.0)
Imports: pwalign, dplyr, ggplot2
Suggests: Biostrings, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)