glycoTraitR
Compute and analyze the glycan structrual traits from GPSM data
Bioconductor version: 3.24 · Package version: 1.1.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
GlycoTraitR is an R package for analyzing glycoproteomics data, particularly glycopeptide-spectrum matches (GPSMs). It supports results generated by the pGlyco3 and Glyco-Decipher search engines. The package parses glycan structures, computes monosaccharide compositions and structural traits, and performs differential analysis of glycan heterogeneity. It constructs trait-by-PSM matrices stored in a SummarizedExperiment object, supports user-defined structural motifs, and provides visualization utilities for interpreting glycan trait changes.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("glycoTraitR")Details
| Maintainer | Bingyuan Zhang <zhang.bingyuan.w8@f.mail.nagoya-u.ac.jp> |
| Author | Bingyuan Zhang [aut, cre] (ORCID: <https://orcid.org/0000-0002-4892-323X>), Koichi Himori [aut], Yusuke Matsui [aut, fnd] |
| License | MIT + file LICENSE |
| URL | https://github.com/matsui-lab/glycoTraitR |
| Bug Reports | https://github.com/matsui-lab/glycoTraitR/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | MassSpectrometry, Proteomics, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/glycoTraitR/ |
Citation
From within R, enter citation("glycoTraitR"):
Bingyuan Zhang, Koichi Himori, Yusuke Matsui. glycoTraitR: Compute and analyze the glycan structrual traits from GPSM data. doi:10.18129/B9.bioc.glycoTraitR, R package version 1.1.0, https://bioconductor.org/packages/glycoTraitR.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | glycoTraitR_1.1.0.tar.gz |
| Windows binary (x86_64) | glycoTraitR_1.1.0.zip |
| macOS binary (arm64) | glycoTraitR_1.1.0.tgz |
| macOS binary (x86_64) | glycoTraitR_1.1.0.tgz |