hammers
Utilities for scRNA-seq data analysis
Bioconductor version: 3.24 · Package version: 1.1.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
hammers is a utilities suite for scRNA-seq data analysis compatible with both Seurat and SingleCellExperiment. It provides simple tools to address tasks such as retrieving aggregate gene statistics, finding and removing rare genes, performing representation analysis, computing the center of mass for the expression of a gene of interest in low-dimensional space, and calculating silhouette and cluster-normalized silhouette.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("hammers")Details
| Maintainer | Andrei-Florian Stoica <andreistoica@foxmail.com> |
| Author | Andrei-Florian Stoica [aut, cre] (ORCID: <https://orcid.org/0000-0002-5253-0826>) |
| License | MIT + file LICENSE |
| URL | https://github.com/andrei-stoica26/hammers |
| Bug Reports | https://github.com/andrei-stoica26/hammers/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneExpression, MultipleComparison, SingleCell, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/hammers/ |
Citation
From within R, enter citation("hammers"):
Andrei-Florian Stoica. hammers: Utilities for scRNA-seq data analysis. doi:10.18129/B9.bioc.hammers, R package version 1.1.0, https://bioconductor.org/packages/hammers.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | hammers_1.1.0.tar.gz |
| Windows binary (x86_64) | hammers_1.1.0.zip |
| macOS binary (arm64) | hammers_1.1.0.tgz |
| macOS binary (x86_64) | hammers_1.1.0.tgz |
Dependencies
Imports: cluster, dplyr, ggplot2, ggrepel, grDevices, henna, LISTO, liver, rlang, scLang, stats, text2vec
Suggests: BiocStyle, knitr, qs2, rmarkdown, scater, scRNAseq, scuttle, testthat (>= 3.0.0), withr
Reverse dependencies
Imports Me (1): GSABenchmark