heatmaps
Flexible Heatmaps for Functional Genomics and Sequence Features
Bioconductor version: 3.24 · Package version: 1.37.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package provides functions for plotting heatmaps of genome-wide data across genomic intervals, such as ChIP-seq signals at peaks or across promoters. Many functions are also provided for investigating sequence features.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("heatmaps")Details
| Maintainer | Malcolm Perry <mgperry32@gmail.com> |
| Author | Malcolm Perry <mgperry32@gmail.com> |
| License | Artistic-2.0 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | FunctionalGenomics, SequenceMatching, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/heatmaps/ |
Citation
From within R, enter citation("heatmaps"):
Malcolm Perry. heatmaps: Flexible Heatmaps for Functional Genomics and Sequence Features. doi:10.18129/B9.bioc.heatmaps, R package version 1.37.0, https://bioconductor.org/packages/heatmaps.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | heatmaps_1.37.0.tar.gz |
| Windows binary (x86_64) | heatmaps_1.37.0.zip |
| macOS binary (arm64) | heatmaps_1.37.0.tgz |
| macOS binary (x86_64) | heatmaps_1.37.0.tgz |
Dependencies
Depends: R (>= 3.5.0)
Imports: methods, grDevices, graphics, stats, Biostrings, GenomicRanges, IRanges, KernSmooth, plotrix, Matrix, EBImage, RColorBrewer, BiocGenerics, Seqinfo
Suggests: BSgenome.Drerio.UCSC.danRer7, knitr, rmarkdown, testthat