DOI: 10.18129/B9.bioc.iSEEde  

This is the development version of iSEEde; for the stable release version, see iSEEde.

iSEE extension for panels related to differential expression analysis

Bioconductor version: Development (3.19)

This package contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels or modes facilitating the analysis of differential expression results. This package does not perform differential expression. Instead, it provides methods to embed precomputed differential expression results in a SummarizedExperiment object, in a manner that is compatible with interactive visualisation in iSEE applications.

Author: Kevin Rue-Albrecht [aut, cre] , Thomas Sandmann [ctb] , Denali Therapeutics [fnd]

Maintainer: Kevin Rue-Albrecht <kevinrue67 at>

Citation (from within R, enter citation("iSEEde")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Introduction to iSEEde
HTML R Script Rounding numeric values
HTML R Script Supported differential expression methods
HTML R Script Using annotations to facilitate interactive exploration
PDF   Reference Manual
Text   NEWS


biocViews DifferentialExpression, Infrastructure, Software
Version 1.1.0
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License Artistic-2.0
Depends iSEE
Imports DESeq2, edgeR, methods, S4Vectors, shiny, SummarizedExperiment
Suggests airway, BiocStyle, covr, knitr, limma,, RefManageR, rmarkdown, scuttle, sessioninfo, statmod, testthat (>= 3.0.0)
Depends On Me
Imports Me
Suggests Me iSEEpathways
Links To Me
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Source Package iSEEde_1.1.0.tar.gz
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