lcmsPlot
Comprehensive Liquid Chromatography-Mass Spectrometry (LC-MS) data visualisation package
Bioconductor version: 3.24 · Package version: 1.1.13
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
lcmsPlot is an R package designed for visualising Liquid Chromatography-Mass Spectrometry (LC-MS) data with publication-ready high-quality plots. The package enables users to generate and customise chromatograms, mass traces, spectra, and more with fine-tuned aesthetics and annotation options.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("lcmsPlot")Details
| Maintainer | Ossama Edbali <o.edbali@bham.ac.uk> |
| Author | Ossama Edbali [aut, cre] (ORCID: <https://orcid.org/0000-0003-0132-8668>), Ralf Johannes Maria Weber [aut] (ORCID: <https://orcid.org/0000-0002-8796-4771>) |
| License | GPL-3 |
| URL | https://github.com/computational-metabolomics/lcmsPlot |
| Bug Reports | https://github.com/computational-metabolomics/lcmsPlot/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | MassSpectrometry, Metabolomics, Software |
| Package Short Url | https://bioconductor.org/packages/lcmsPlot/ |
Citation
From within R, enter citation("lcmsPlot"):
Ossama Edbali, Ralf Johannes Maria Weber. lcmsPlot: Comprehensive Liquid Chromatography-Mass Spectrometry (LC-MS) data visualisation package. doi:10.18129/B9.bioc.lcmsPlot, R package version 1.1.13, https://bioconductor.org/packages/lcmsPlot.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
- Creating publication-ready LC-MS data plots
- Easy-to-use, intuitive, and efficient LC-MS data plotting with lcmsPlot
Download
Follow the installation instructions to use this package in your R session.
| Source package | lcmsPlot_1.1.13.tar.gz |
| Windows binary (x86_64) | lcmsPlot_1.1.13.zip |
| macOS binary (arm64) | lcmsPlot_1.1.13.tgz |
| macOS binary (x86_64) | lcmsPlot_1.1.13.tgz |
Dependencies
Depends: R (>= 4.4.0)
Imports: methods, rlang, dplyr, tibble, tidyr, BiocParallel, MSnbase, xcms, MsExperiment, mzR, Spectra, MsBackendMsp, S4Vectors, ggplot2, scales, patchwork, DBI, RSQLite, jsonlite
Suggests: knitr, rmarkdown, BiocStyle, openxlsx, faahKO, rawrr, msPurity, ggnewscale, htmltools, shiny, shinytoastr, shinytest2, testthat (>= 3.0.0)