DOI: 10.18129/B9.bioc.logicFS    

This is the development version of logicFS; for the stable release version, see logicFS.

Identification of SNP Interactions

Bioconductor version: Development (3.9)

Identification of interactions between binary variables using Logic Regression. Can, e.g., be used to find interesting SNP interactions. Contains also a bagging version of logic regression for classification.

Author: Holger Schwender, Tobias Tietz

Maintainer: Holger Schwender <holger.schw at gmx.de>

Citation (from within R, enter citation("logicFS")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("logicFS", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script logicFS Manual
PDF   Reference Manual


biocViews Classification, Genetics, SNP, Software
Version 2.3.0
In Bioconductor since BioC 1.8 (R-2.3) (13 years)
License LGPL (>= 2)
Depends LogicReg, mcbiopi, survival
Imports graphics, methods, stats
Suggests genefilter, siggenes
Depends On Me
Imports Me
Suggests Me trio
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package logicFS_2.3.0.tar.gz
Windows Binary logicFS_2.3.0.zip
Mac OS X 10.11 (El Capitan) logicFS_2.3.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/logicFS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/logicFS
Package Short Url http://bioconductor.org/packages/logicFS/
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