DOI: 10.18129/B9.bioc.methylPipe    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of methylPipe; for the stable release version, see methylPipe.

Base resolution DNA methylation data analysis

Bioconductor version: Development (3.15)

Memory efficient analysis of base resolution DNA methylation data in both the CpG and non-CpG sequence context. Integration of DNA methylation data derived from any methodology providing base- or low-resolution data.

Author: Kamal Kishore

Maintainer: Kamal Kishore <kamal.fartiyal84 at>

Citation (from within R, enter citation("methylPipe")):


To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


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biocViews Coverage, DNAMethylation, MethylSeq, Sequencing, Software
Version 1.29.2
In Bioconductor since BioC 3.0 (R-3.1) (7 years)
License GPL(>=2)
Depends R (>= 3.2.0), methods, grDevices, graphics, stats, utils, GenomicRanges, SummarizedExperiment(>= 0.2.0), Rsamtools
Imports marray, gplots, IRanges, BiocGenerics, Gviz, GenomicAlignments, Biostrings, parallel, data.table, GenomeInfoDb, S4Vectors
Suggests BSgenome.Hsapiens.UCSC.hg18, TxDb.Hsapiens.UCSC.hg18.knownGene, knitr, MethylSeekR
Depends On Me ListerEtAlBSseq
Imports Me compEpiTools
Suggests Me
Links To Me
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