muscle
Multiple Sequence Alignment with MUSCLE
Bioconductor version: 3.24 · Package version: 3.55.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
MUSCLE performs multiple sequence alignments of nucleotide or amino acid sequences.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("muscle")Details
| Maintainer | Alex T. Kalinka <alex.t.kalinka@gmail.com> |
| Author | Algorithm by Robert C. Edgar. R port by Alex T. Kalinka. |
| License | Unlimited |
| URL | http://www.drive5.com/muscle/ |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Alignment, DataImport, Genetics, MultipleSequenceAlignment, SequenceMatching, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/muscle/ |
Citation
From within R, enter citation("muscle"):
Algorithm by Robert C. Edgar. R port by Alex T. Kalinka. muscle: Multiple Sequence Alignment with MUSCLE. doi:10.18129/B9.bioc.muscle, R package version 3.55.0, https://bioconductor.org/packages/muscle.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | muscle_3.55.0.tar.gz |
| Windows binary (x86_64) | muscle_3.55.0.zip |
| macOS binary (arm64) | muscle_3.55.0.tgz |
| macOS binary (x86_64) | muscle_3.55.0.tgz |
Dependencies
Depends: Biostrings
Reverse dependencies
Suggests Me (4): BOLDconnectR, BOLDNODE, orthGS, seqmagick